Author

Alberto d’Onofrio

Memorial Sloan Kettering Cancer CenterORCID 0000-0002-2190-272XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:Bayesian inference· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Fabio AnselmiiD· 2 shared Giulio CaravagnaiD· 2 shared Nicola CalonaciiD· 2 shared Riccardo Bergamin· 2 shared Salvatore MiliteiD· 2 shared Alex GraudenziiD· 1 shared Alice Antonello· 1 shared Alona SosinskyiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersBioinformatics

Fabio AnselmiORCID

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2 papers

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedNov 2, 2023

A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing

Lucrezia Patruno, Salvatore Milite, Riccardo Bergamin…·Giulio Caravagna

CONGAS+ is a Bayesian method that maps single-cell RNA and ATAC data to copy number clones, revealing subclonal architectures and genotype-phenotype relationships in cancer.

8 citations

humanscRNA-seq

BioinformaticsbioRxivPreprintFeb 13, 2021

Computational validation of clonal and subclonal copy number alterations from bulk tumour sequencing

Alice Antonello, Riccardo Bergamin, Nicola Calonaci…·Giulio Caravagna

This paper introduces CNAqc, a toolset for validating clonal and subclonal copy number alterations in bulk tumor sequencing by addressing tumor purity, ploidy, and heterogeneity using simulations and single-cell data.

11 citations

humanwhole-exome sequencing