SERPINA3 and NDRG1 are critical diagnostic immune genes associated with macrophages in preeclampsia

Abstract

ObjectiveThe immune system plays a role in the occurrence and progression of numerous pregnancy complications, particularly preeclampsia (PE). This study aims to identify critical immune biomarkers via machine learning and assess their predictive ability. MethodsGene expression data were retrieved from the GEO database, while immune-related genes were obtained from the ImmPort repository. Differential expression analysis was then conducted to identify immune genes associated with PE. Different immune-related genes (DIRGs) were subjected to functional and pathway enrichment analysis. We adopted protein-protein interaction (PPI) networks for exploring the connections among various DIRGs and integrated two machine-learning to pinpoint candidate biomarkers in PE. Diagnostic performance was assessed via ROC curve analysis, with predictive accuracy further quantified using nomogram calibration. Findings were validated through integrated computational and experimental analyses. In silico validation utilized additional GEO datasets, while experimental confirmation involved qRT-PCR and IHC assessment of placental tissues. We developed a nomogram to predict PE utilizing two immune-related genes. Cellular composition was inferred from transcriptomic data using CIBERSORT deconvolution.. ResultsWe identified 66 differentially expressed genes (DEGs) and 10 DIRGs between PE pregnancies and normotensive pregnancies. The GO analyses revealed that the DIRGs were enriched in gonadotropin secretion, the regulation of gonadotropin secretion, and the regulation of endocrine processes. Functional annotation revealed enrichment in cytokine and neuroactive ligand-receptor pathways. SERPINA3 and NDRG1 emerged as top-performing biomarkers (training AUCs: 0.812 and 0.866; external validation: 0.795 and 0.781), with overexpression validated in clinical specimens. Both genes inversely regulated M2 macrophage abundance (P < 0.05). ConclusionPE is fundamentally an immune-mediated disorder. SERPINA3 and NDRG1 can be identified as key immune genes associated with M2 macrophages, and these findings provide novel perspectives for the diagnosis and pathogenesis of PE.