bioRxivEvolutionary Biology
The most primitive extant ancestor of organisms and discovery of definitive evolutionary equations
Abstract
Organisms are classified into three domains, Prokaryota, Archaea, and Eukaryota, and their evolutionary divergence has been characterized based on morphological and molecular features using rationale based on Darwins theory of natural selection. However, universal rules that govern genome evolution have not been identified. Here, a simple, innovative approach has been developed to evaluate biological evolution initiating the origin of life: whole genomes were divided into several fragments, and then differences in normalized nucleotide content between nucleotide pairs were compared. Based on nucleotide content structures, Monosiga brevicollis mitochondria may be the most primitive extant ancestor of the species examined here. The two normalized nucleotide contents are universally expressed by a linear regression line, (X - Y)/(X + Y) = a (X - Y) + b, where X and Y are nucleotide contents and (a) and (b) are constants. The value of (G + C), (G + A), (G + T), (C + A), (C + T) and (A + T) was ~0.5. Plotting (X - Y)/(X + Y) against X/Y showed a logarithmic function (X - Y)/(X + Y) = a ln X/Y + b, where (a) and (b) are constant. Nucleotide content changes are expressed by a definitive equation, (X - Y) {approx} 0.25 ln(X/Y).
- assay: whole-genome sequencing
- research focus: chromatin & epigenetic regulation
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Laws of genome nucleotide composition
Zhang Zhang·Genomics Proteomics & BioinformaticsPeer-reviewed·Aug 1, 2024
- An overview on the DNA nucleotide compositions across kingdoms
Y. Guo·bioRxiv·Dec 8, 2016
- The triplet codons across the watershed between the non-living and living matters
D. J. Li·bioRxiv·Sep 14, 2022
- Concurrent origins of the genetic code and the homochirality of life, and the origin and evolution of biodiversity. Part I: Observations and explanations
Dirson Jian Li·bioRxiv·Apr 13, 2015
- Inverse relationship between mitochondrial and non-coding nuclear DNA content in free-living kinetoplastids
Daryna Zavadska, Borys Olifirov, … Daniel J. Richter·bioRxiv·Oct 6, 2026
- Genome Tree of Life: Deep Burst of Organism Diversity