Methods in Ecology and EvolutionEcologyPeer-reviewed journal article
Zero-shot animal behavior classification with vision-language foundation models
Gaspard DussertiD, Vincent MieleiD, Colin Van ReethiD, Anne DelestradeiD, Stéphane DrayiD, Simon Chamaillé‐JammesiD
Abstract
1. Understanding the behavior of animals in their natural habitats is critical to ecology and conservation. Camera traps are a powerful tool to collect such data with minimal disturbance. They however produce very a large quantity of images, which can make human-based annotation cumbersome or even impossible. While automated species identification with artificial intelligence has made impressive progress, automatic classification of animal behaviors in camera trap images remains a developing field. 2. Here, we explore the potential of foundation models, specifically Vision Language Models (VLMs), to perform this task without the need to first train a model, which would require some level of human-based annotation. Using an original dataset of alpine fauna with behaviors annotated by participatory science, we investigate the zero-shot capabilities of different kind of recent VLMs to predict behaviors and estimate behavior-specific diel activity patterns in three ungulate species. 3. Our results show that using these methods, it is possible to achieve accuracies over 91% in behavior classification and produce activity patterns that closely align with those derived from participatory science data (overlap indexes between 84% and 90%). 4. These findings demonstrate the potential of foundation models and vision-language models in ecological research. Ecologists are encouraged to adopt these new methods and leverage their full capabilities to facilitate ecological studies.
- organism: multiple species
- assay: imaging
- assay: fluorescence / live-cell microscopy
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: deep learning
- approach: transformer / foundation model
- Citations
- 24
- FWCI
- 10.13
- Field percentile
- top 1%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Machine learning to classify animal species in camera trap images: applications in ecology
M. A. Tabak, M. S. Norouzzadeh, … R. S. Miller·bioRxiv·Jul 9, 2018
- CameraTrapDetectoR: Automatically detect, classify, and count animals in camera trap images using artificial intelligence
M. A. Tabak, D. Falbel, … R. S. Miller·bioRxiv·Feb 7, 2022
- WildCLIP: Scene and animal attribute retrieval from camera trap data with domain-adapted vision-language models
V. Gabeff, M. Russwurm, … A. Mathis·bioRxiv·Dec 22, 2023
- The DeepFaune initiative: a collaborative effort towards the automatic identification of the French fauna in camera-trap images
N. Rigoudy, G. Dussert, … Siefert·bioRxiv·Mar 15, 2022
- Video Foundation Models for Animal Behavior Analysis
Jennifer J. Sun, Hao Zhou, … Ting Liu·bioRxiv·Jul 30, 2024
- High performance machine learning models can fully automate labeling of camera trap images for ecological analyses
R. C. Whytock, J. Swiezewski, … K. A. Abernethy·bioRxiv·Sep 12, 2020