bioRxivSystems BiologyPreprint
Bursty Gene Expression in Single Cells and Expanding Populations: A Discrete Approach
Jakub Poljovka, Iryna ZabaikinaiD, Pavol BokesiD, Abhyudai SinghiD
Abstract
Bursty protein production is a key source of gene expression noise. In this study, we analyze a Markovian model of cellular protein dynamics, where proteins are produced in geometrically distributed bursts. Extending this model, we incorporate a feedback mechanism by assuming that higher protein levels reduce both cell growth and protein decay rates. We study both single-cell dynamics and an expanding cell population. Without feedback, the protein level follows a negative binomial distribution with the same parameters in both cases. With feedback, however, single-cell and population-level distributions differ, each expressible as a mixture of two negative binomial distributions with framework-dependent parameters. Using numerical integration of the master and population balance equations, we calculate the time-dependent distributions in both settings. This work extends previous continuous models and provides new insights into how population expansion influences intrinsic cellular heterogeneity.
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Stochastic Gene Expression in Proliferating Cells: Differing Noise Intensity in Single-Cell and Population Perspectives
Zhanhao Zhang, Iryna Zabaikina, … Abhyudai Singh·PLoS Computational BiologyPeer-reviewed·Jun 10, 2025
- Gene Expression Variability with Feedback Regulation Implemented via Protein-Dependent Cell Growth
Iryna Zabaikina, Pavol Bokes, Abhyudai Singh·bioRxiv·Apr 15, 2026
- Exact and WKB-approximate distributions in a gene expression model with feedback in burst frequency, burst size, and protein stability
Pavol Bokes·Discrete and Continuous Dynamical Systems - BPeer-reviewed·Apr 21, 2021
- Quantifying noise modulation from coupling of stochastic expression to cellular growth: An analytical approach
Iryna Zabaikina, Zhanhao Zhang, … Abhyudai Singh·bioRxiv·Oct 3, 2022
- Stochastic Gene Expression Model with State-Dependent Protein Activation Delay
Poulami Chatterjee, Abhyudai Singh·bioRxiv·Apr 3, 2026
- Noise induced bimodality in genetic circuits with monostable positive feedback
Pavol Bokes, Abhyudai Singh·European Control Conference (ECC)Peer-reviewed·Jun 1, 2019