bioRxivGeneticsPreprint
Evaluating drought tolerance stability in soybean by theresponse of irrigation change captured from time-seriesmultispectral data
Kengo SakuraiiD, Yusuke TodaiD, Kosuke HamazakiiD, Yoshihiro OhmoriiD, Yuji YamasakiiD, Hirokazu TakahashiiD, Hideki TakanashiiD, Mai TsudaiD, Hisashi TsujimotoiD, Akito KagaiD, Mikio NakazonoiD, Toru FujiwaraiD, Hiroyoshi IwataiD
Abstract
This study investigated a method to evaluate the drought tolerance stability of a genotype in a single environmental trial by capturing the plant response to irrigation changes. Genotypes that exhibit stable phenotypes under various drought stress conditions are required for stable crop production. However, considerable time and money are required to evaluate the environmental stability of a genotype through multiple environmental trials. As an index of drought tolerance stability, we calculated the coefficient of variation (CV) of shoot fresh weight of 178 soybean (Glycine max (L.) Merr.) accessions in a total of nine types of drought treatments, including changing irrigation treatments (every five or ten days) over 3-year trials. To capture the plant responses to irrigation changes, time-series multispectral (MS) data were collected, including the timings of the irrigation/non-irrigation switch in the changing irrigation treatments. We built a random regression model (RRM) for each of the nine treatments using the time-series MS data. We built a genomic prediction model (MTRRM model) using the genetic random regression coefficients of RRM as secondary traits and evaluated the accuracy of each model for predicting CV. In two out of the three years, the prediction accuracy of MTRRM models built in the changing irrigation treatment was higher than that in the continuous drought treatment in the same year. When the CV was predicted using the MTRRM model across years in the changing irrigation treatment, the prediction accuracy was 61% higher than that of the simple genomic prediction model. These results suggest that drought tolerance stability can be evaluated in a single environmental trial, which may reduce the time and cost of selecting genotypes with high drought tolerance stability.
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Spatio-temporal evaluation of drought adaptation in wheat revealed NDVI and MTSI as powerful tools for selecting tolerant genotypes
S. R. S, G. M. Singh, … A. K. Joshi·bioRxiv·Jan 29, 2023
- Pre-Breeding of Sorghum (Sorghum bicolor L. Moench) for Drought Tolerance in the Semi-Arid Zones of Nigeria
Muhammad Ahmad Yahaya, Mohammad Faguji Ishiyaku, Lateefat Bolanle Hassan·bioRxiv·Aug 11, 2026
- Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice
ADITI BHANDARI, Jérôme Bartholomé, … Nourollah Ahmadi·PLoS ONEPeer-reviewed·May 6, 2019
- Root and canopy traits and adaptability genes explain drought tolerance mechanism in winter wheat.
A. Nehe, J. Foulkes, … A. Morgunov·bioRxiv·Nov 4, 2020
- Screening of beans (Phaseolus vulgaris L.) genotypes for drought tolerance
C. Dorji, J. Thinley·bioRxiv·Jan 14, 2021
- Natural variation further increases resilience of sorghum bred for chronically drought-prone environments
Hongxu Dong, Techale Birhan, … Kassahun Bantte·Journal of Experimental BotanyPeer-reviewed·May 23, 2022