bioRxivAnimal Behavior & Cognition
Inferring internal states across mice and monkeys using facial features
A. Tlaie, M. Y. Abd El Hay, B. Mert, R. Taylor, P. A. Ferracci, K. A. Shapcott, M. Glukhova, J. W. Pillow, M. N. Havenith, M. Scholvinck
Abstract
Animal behaviour is shaped to a large degree by internal cognitive states, but it is unknown whether these states are similar across species. To address this question, here we develop a virtual reality setup in which male mice and macaques engage in the same naturalistic visual foraging task. We exploit the richness of a wide range of facial features extracted from video recordings during the task, to train a Markov-Switching Linear Regression (MSLR). By doing so, we identify, on a singletrial basis, a set of internal states that reliably predicts when the animals are going to react to the presented stimuli. Even though the model is trained purely on reaction times, it can also predict task outcome, supporting the behavioural relevance of the inferred states. The relationship of the identified states to task performance is comparable between mice and monkeys. Furthermore, each state corresponds to a characteristic pattern of facial features that partially overlaps between species, highlighting the importance of facial expressions as manifestations of internal cognitive states across species.
- organism: mouse
- organism: non-human primate
- assay: imaging
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- research focus: cell-cell communication
- approach: deep learning
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Facial expressions in mice reveal latent cognitive variables and their neural correlates
Fanny Cazettes, Davide Reato, … Zachary F. Mainen·Nature NeurosciencePeer-reviewed·Sep 30, 2025
- Sharing the Spotlight: Uncovering common attentional dynamics across species
Mina Glukhova, Alejandro Tlaie, … Marieke Louise Schölvinck·PLoS Computational BiologyPeer-reviewed·Apr 22, 2026
- Behavioral characterization of dynamic facial expression perception in rhesus monkeys (Macaca mulatta) using naturalistic and synthetic stimuli
Ramona Siebert, Nick Taubert, … Peter Thier·Animal CognitionPeer-reviewed·Oct 5, 2026
- Automatic recognition of macaque facial expressions for detection of affective states
Anna Morozov, Lisa Parr, … Raviv Pryluk·eNeuroPeer-reviewed·Nov 1, 2021
- Classification of Multiple Emotional States from Facial Expressions in Mice using a Deep Learning-Based Image Analysis
Yudai Tanaka, Takuto Nakata, … Daisuke Ino·PLoS ONEPeer-reviewed·Jul 20, 2023
- Comparing rapid rule-learning strategies in humans and monkeys
V. Goudar, J.-W. Kim, … X.-J. Wang·bioRxiv·Jan 10, 2023