bioRxivNeurosciencePreprint
Optimizing MR-based gaze-decoding for eyes-closed eye-tracking in fMRI
Sina M KlingiD, Uriel LascombesiD, Matthias NauiD, Guillaume S. MassoniD, Martin SzinteiD
Abstract
Eye movements provide valuable insights into human cognition and are a critical variable in numerous functional magnetic resonance imaging (fMRI) studies. Yet, when the eyes are closed, camera-based eye-tracking is unavailable, making studies of eyes-closed states challenging. Here, we address this gap using DeepMReye, a deep learning framework for camera-free gaze reconstruction from the MR-signal of the eyes. We first show that fine-tuning DeepMReye on visuomotor calibration data acquired with the eyes open significantly improves gaze decoding, and that this fine-tuning does not require simultaneous camera-based data. We next assessed whether decoding could be extended to eyes-closed states using a novel auditory-guided task, in which participants gazed at learned target positions with and without visual input, and with their eyes open, blinking, or closed. While DeepMReye was originally trained exclusively on eyes-open data, the network successfully generalized to eyes-closed periods, and this generalization was further improved through task-specific fine-tuning. Finally, fine-tuning also improved decoding of eyelid-state (open versus closed) directly from the MR-signal. These findings demonstrate that gaze and eyelid-state monitoring during eyes-closed periods is feasible, enabling broader integration of eye-tracking in fMRI research.
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- MR-based camera-less eye tracking using deep neural networks
Markus Frey, Matthias Nau, Christian F. Doeller·bioRxiv·Nov 30, 2020
- fMRI-Based Prediction of Eye Gaze During Naturalistic Movie Viewing Reveals Eye-Movement-Related Brain Activity
Le Gao, Zhi Wei, … Xin Di·PsychoradiologyPeer-reviewed·Jan 1, 2026
- Brain-wide gaze-dependent activity during eyes-closed rest and sleep
Zachary Nudelman, Matthias Nau·bioRxiv·Jul 16, 2026
- Evaluating fMRI-Based Estimation of Eye Gaze during Naturalistic Viewing
Jake J. Son, Lei Ai, … Michael Peter Milham·Cerebral CortexPeer-reviewed·Jun 26, 2019
- Motion-corrected eye tracking (MoCET) improves gaze accuracy during visual fMRI experiments
Jiwoong Park, Jae Young Jeon, … Won Mok Shim·Nature CommunicationsPeer-reviewed·Dec 18, 2025
- Transfer learning of deep neural network representations for fMRI decoding
Michele Svanera, Mattia Savardi, … Giancarlo Valente·Journal of Neuroscience MethodsPeer-reviewed·Oct 1, 2019