bioRxivBioinformaticsPreprint
From topography to connectome: Towards an integrated understanding of the resting brain
Samuel Naranjo RinconiD, Fyzeen AhmadiD, Ty O. EasleyiD, Shirin ShoushtariiD, Tristan GlatardiD, Gregory KiariD, Hailey ModiiD, Simon Dahan, Emma Robinson, Ulugbek Kamilov, Janine Diane BijsterboschiD
Abstract
As the field expands from early research into the human connectome, there has been a fast expansion in the number of analytical approaches to study resting state functional MRI (rsfMRI) data. With increasing focus on individual differences, topographical brain maps of spatial organization have emerged in addition to traditional functional connectomes. Here, we developed a deep-learning model to embed maps of network topography and faithfully translate to individualized connectomes. Results confirmed the validity of the surface vision transformer based on reconstruction accuracy (0.73{+/-}0.09) and accurate topography-to-connectome translation (0.43{+/-}0.08). Importantly, translated connectomes retained identifiability and brain-cognition associations. These findings establish a direct mapping from spatial topography to connectomes that can be used to integrate scientific insights across rsfMRI sub-fields. This is an important step towards broadening our conceptualization of the connectome and supporting a broader integration of findings to inform a complete understanding of the human connectome. TeaserTranslating from spatial maps of brain organization to region-to-region connectomes retains shared individual differences.
- organism: human
- assay: imaging
- research focus: dimensionality reduction
- research focus: benchmarking
- research focus: software / tool
- approach: deep learning
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Brain Connectivity Modelling Through Joint Estimation of Parcels and Gradients
Aref Miri Rekavandi, Saâd Jbabdi, Stephen M. Smith·bioRxiv·Jun 28, 2026
- Spatial Topography of Individual-Specific Cortical Networks Predicts Human Cognition, Personality and Emotion
Ru Kong, Jingwei Li, … B.T. Thomas Yeo·Cerebral CortexPeer-reviewed·May 10, 2018
- Resting-state network topology and planning ability in healthy adults
Chris Vriend, Margot J. Wagenmakers, … Ysbrand D. van der Werf·Brain Structure and FunctionPeer-reviewed·Dec 21, 2019
- A Riemannian approach to predicting brain function from the structural connectome
Oualid M. Benkarim, Casey Paquola, … Boris C. Bernhardt·NeuroImagePeer-reviewed·May 27, 2022
- Assessing Variations in Areal Organization for the Intrinsic Brain: From Fingerprints to Reliability
Ting Xu, Alexander Opitz, … Michael Milham·Cerebral CortexPeer-reviewed·Sep 6, 2016
- Connectomes across temporal scales with simultaneous wide-field optical imaging and resting-state functional MRI
Wen‐Ju Pan, Lauren Daley, … Shella Dawn Keilholz·bioRxiv·Feb 3, 2026