New PhytologistEvolutionary BiologyPeer-reviewed journal article
The Origin And Speciation Of Orchids
O. A. Perez-Escobar, D. Bogarin, N. A. Przelomska, J. Ackerman, J. A. Balbuena, S. Bellot, R. P. Buehlmann, B. Cabrera, J. A. Cano, M. Charitonidou, G. Chomicki, M. A. Clements, P. Cribb, M. Fernandez, N. S. Flanagan, B. Gravendeel, E. Hagsater, J. M. Halley, A.-Q. Hu, C. Jaramillo, A. V. Mauad, O. Maurin, R. Muentz, I. J. Leitch, L. Li, , F. L. Condamine
Abstract
Orchids constitute one of the most spectacular radiations of flowering plants. However, their geographical origin, historical spread across the globe, and hotspots of speciation remain uncertain due to the lack of a broad phylogenomic framework. We present a new Orchidaceae phylogeny based on high-throughput and Sanger sequencing datasets, covering all five subfamilies, 17/22 tribes, 40/49 subtribes, 285/736 genera, and [~]7% (1,921) of the currently 29,524 accepted species. We then use it to infer geographic range evolution, diversity, and speciation patterns by adding curated geographical distribution data through the World Checklist of Vascular Plants. Orchids most recent common ancestor is traced back to the Late Cretaceous in Laurasia. The modern Southeast Asian range of subfamily Apostasioideae is interpreted as relictual, matching the history of numerous clades that went extinct at higher latitudes following the global climate cooled during the Oligocene. Despite their ancient origins, modern orchid species diversity mainly originated over the last 5 Ma, with the fastest speciation rates found in south-eastern Central America. Our results substantially alter our understanding of the geographic origin of orchids, previously proposed as Australian, and further pinpoint the role of Central American as a region of recent and explosive speciation.
- organism: plant (other)
- assay: DNA methylation
- assay: whole-genome sequencing
- research focus: phylogenetics / evolution
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Speciation across the Earth driven by global cooling in terrestrial Orchids
J. B. Thompson, K. E. Davis, … N. K. Priest·bioRxiv·Feb 6, 2021
- Evolutionary relationships and range evolution of greenhood orchids (subtribe Pterostylidinae): insights from plastid phylogenomics
K. Nargar, K. O'Hara, … M. A. Clements·bioRxiv·Mar 30, 2022
- Recent origin of Neotropical orchids in the world’s richest plant biodiversity hotspot
O. A. Perez-Escobar, G. Chomicki, … A. Antonelli·bioRxiv·Feb 6, 2017
- Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution
M. A. Serna Sanchez, O. A. Perez-Escobar, … T. Arias·bioRxiv·Nov 3, 2020
- Plastid phylogenomics clarifies broad-level relationships in Bulbophyllum (Orchidaceae) and provides insights into range evolution of Australasian section Adelopetalum
L. Simpson, M. A. Clements, … K. Nargar·bioRxiv·Jul 24, 2022
- Early Cretaceous Origin and Evolutionary History of Palms (Arecaceae) inferred from 1,033 Nuclear Genes and a New Synthesis of Fossil Evidence
Sidonie Bellot, Fabien L. Condamine, … William John Baker·Systematic BiologyPeer-reviewed·Feb 27, 2026