bioRxivSystems BiologyPreprint
A Reduced Mechanistic Model for Aquatic Decomposition of a Human Body
Ufuk AkıniD, Ömer Faruk AykıriD, Neslihan Nesliye PeleniD, Melike KaplaniD
Abstract
Estimating the postmortem submersion interval (PMSI) remains challenging due to complex biological and environmental interactions during aquatic decomposition. This study proposes a reduced mechanistic ordinary differential equation (ODE) model linking tissue degradation, microbial activity, and dissolved oxygen dynamics. Calibrated against the total aquatic decomposition score (TADS) trajectory for Northern Adriatic Sea cases, the model preserves a strictly monotone TADS--time relationship, ensuring unique numerical inversion from observed TADS to PMSI. Synthetic observation experiments evaluated how data selection influences parameter recovery, practical identifiability, and robustness under measurement uncertainty. Microbial measurements improved parameter recovery for microbial dynamics, whereas dissolved oxygen measurements constrained oxygen-consumption and renewal processes. Combining both types of observation optimized the recovery of coupled parameters. Trajectory reconstruction, profile likelihood analysis, boundary-hit frequencies, and Monte Carlo simulations confirmed these findings. Importantly, while all observation strategies reproduced TADS with comparable accuracy, they differed substantially in recovering underlying biological parameters and latent-state dynamics. Thus, accurately reproducing decomposition scores alone is insufficient for reliable parameter inference. This framework provides a transparent and biologically interpretable foundation for the mechanistic estimation of PMSI. Future applications to case-level and multi-site datasets may enable site-specific recalibration and improved predictive evaluation across diverse aquatic environments.
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Spatial Variability in Soil Necrobiome Communities has a Negligible Effect on Postmortem Interval Estimation
Lesley Hewett, Cydney Rimok, … Aaron B. A. Shafer·bioRxiv·Jul 8, 2026
- Microbiology and Anthropology: a multidisciplinary approach for estimating time since death during Winter in rural New South Wales, Australia.
Hayley Green, Björn A. Espedido, … Charles Oliver Morton·Australian Journal of Forensic SciencesPeer-reviewed·Mar 13, 2025
- Testing the Tea Bag Index as a potential indicator for assessing litter decomposition in aquatic ecosystems
- The "ForensOMICS" approach to forensic post-mortem interval estimation: combining metabolomics, lipidomics and proteomics for the analysis of human bone.
A. Bonicelli, H. L. Mickleburgh, … N. Procopio·bioRxiv·Sep 29, 2022
- The Microbiome and Volatile Organic Compounds Reflect the State of Decomposition in an Indoor Environment
V. M. Cappas, E. Davenport, D. G. Sykes·bioRxiv·May 18, 2022
- The Human Metabolome and Machine Learning Improves Predictions of the Post-Mortem Interval
Rasmus Magnusson, Carl Söderberg, … Elin Nyman·Nature CommunicationsPeer-reviewed·Feb 11, 2026