eLifeNeurosciencePeer-reviewed journal article
Likelihood Approximation Networks (LANs) for Fast Inference of Simulation Models in Cognitive Neuroscience
Alexander FengleriD, Lakshmi Narasimhan GovindarajaniD, Tony CheniD, Michael J. FrankiD
Abstract
In cognitive neuroscience, computational modeling can formally adjudicate between theories and affords quantitative fits to behavioral/brain data. Pragmatically, however, the space of plausible generative models considered is dramatically limited by the set of models with known likelihood functions. For many models, the lack of a closed-form likelihood typically impedes Bayesian inference methods. As a result, standard models are evaluated for convenience, even when other models might be superior. Likelihood-free methods exist but are limited by their computational cost or their restriction to particular inference scenarios. Here, we propose neural networks that learn approximate likelihoods for arbitrary generative models, allowing fast posterior sampling with only a one-off cost for model simulations that is amortized for future inference. We show that these methods can accurately recover posterior parameter distributions for a variety of neurocognitive process models. We provide code allowing users to deploy these methods for arbitrary hierarchical model instantiations without further training.
- Citations
- 80
- FWCI
- 9.48
- Field percentile
- top 1%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Flexible and efficient simulation-based inference for models of decision-making
Jan Boelts, Jan-Matthis Lueckmann, … Jakob H. Macke·eLifePeer-reviewed·Jul 27, 2022
- Artificial neural networks for model identification and parameter estimation in computational cognitive models
M. Rmus, T.-F. Pan, … A. G. E. Collins·bioRxiv·Sep 14, 2023
- Model Based Inference of Large Scale Brain Networks with Approximate Bayesian Computation
Timothy O. West, Luc Berthouze A, … Vladimir Litvak A·bioRxiv·Aug 26, 2020
- Distributed Sampling-based Bayesian Inference in Coupled Neural Circuits
Wenhao Zhang, Tai Sing Lee, … Si Wu·bioRxiv·Jul 20, 2020
- Methods and considerations for estimating parameters in biophysically detailed neural models with simulation based inference
Nicholas M. Tolley, Pedro Luiz Coelho Rodrigues, … Stephanie R. Jones·PLoS Computational BiologyPeer-reviewed·Feb 26, 2024
- HSSM: A Widely Applicable Toolbox for Hierarchical Bayesian Neuro-cognitive Modeling
Alexander Fengler, Yang Xu, … Michael J. Frank·bioRxiv·Jun 9, 2026