henhaobio
Sign in

bioRxivNeurosciencePreprint

To Smooth or not to Smooth: Enhancing Specificity While Maintaining Sensitivity

Eileen Luders AiD, Robert DahnkeiD, Christian Gaser BiD, Alzheimer’s Disease Neuroimaging Initiative

PDFDOI

Abstract

Traditionally, when conducting voxel- or vertex-wise analyses in neuroimaging studies, it seemed imperative that brain data are convoluted with a Gaussian kernel, a procedure known as "spatial smoothing". However, we suggest that - under certain conditions - smoothing may be omitted for the benefit of an improved regional specificity. We demonstrate the suitability of this omission by combining high-dimensional spatial registration and threshold-free cluster enhancement (TFCE) in a sample of 754 brains. Our findings revealed that, without smoothing, it is possible to capture brain atrophy within the hippocampal complex while dissociating neighboring areas (cornu ammonis, dentate gyrys, subiculum, and amygdala). In contrast, the traditional smoothing step would result in a single hippocampal cluster (the larger the smoothing kernel, the lower the specificity). Supplemental analyses not only varying the size of the smoothing kernel, but also the size of the sample, the signal-to-noise ratio, as well as the accuracy of the spatial registration confirm that no smoothing (or less smoothing) leads to increased specificity while maintaining sensitivity, at least for small-scale structures (e.g., hippocampus and amygdala). Nevertheless, classic analyses based on smoothed data will continue to provide important insights, especially for large-scale structures (e.g., cortical regions).

Citations
0

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.

Similarity Map
SelectedSame fieldCross-field
THISCoalson '18Behjat '21Jacquemin '26Wu '21Burman '21Bowring '19
60% semantic matchNeuroscience
Timothy S. Coalson, David C. Van Essen, Matthew F. Glasser·Proceedings of the National Academy of Sciences·Jun 20, 2018· 308 citations