bioRxivEvolutionary Biology
Bijections between the multifurcating unlabeled rooted trees and the positive integers
Abstract
AO_SCPLOWBSTRACTC_SCPLOWColijn and Plazzotta (Systematic Biology 67:113-126, 2018) described a bijective scheme for associating the unlabeled bifurcating rooted trees with the positive integers. In mathematical and biological applications of unlabeled rooted trees, however, nodes of rooted trees are sometimes multifurcating rather than bifurcating. Building on the bijection between the unlabeled bifurcating rooted trees and the positive integers, we describe bijective schemes for associating the unlabeled multifurcating rooted trees with the positive integers. We devise bijections with the positive integers for a set of trees in which each non-leaf node has exactly k child nodes, and for a set of trees in which each non-leaf node has at most k child nodes. The calculations make use of Macaulays binomial expansion formula. The generalization to multifurcating trees can assist with the use of unlabeled trees for applications in evolutionary biology, such as the measurement of phylogenetic patterns of genetic lineages in pathogens. Mathematics subject classification (2020)05C05, 05C30, 92D15
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- On the Colijn-Plazzotta numbering scheme for unlabeled binary rooted trees
N. A. Rosenberg·bioRxiv·Jun 16, 2020
- Extension of Colijn-Plazotta tree shape distance metric to unrooted trees
Alexey Anatolievich Morozov·bioRxiv·Dec 26, 2018
- A balance index for phylogenetic trees based on quartets
Tomás M. Coronado, Arnau Mir, … Gabriel Valiente·bioRxiv·Mar 5, 2018
- A new universal system of tree shape indices
Robert Noble, Kimberley Verity·bioRxiv·Jul 17, 2023
- Robust, Universal Tree Balance Indices
J. Lemant, C. Le Sueur, … R. J. Noble·bioRxiv·Aug 25, 2021
- Comparing phylogenetic trees according to tip label categories
Michelle Kendall, Vegard Eldholm, Caroline Colijn·bioRxiv·Jan 22, 2018