bioRxivMicrobiology
Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods
J. J. Pierella Karlusich, E. Pelletier, F. Lombard, M. Carsique, E. Dvorak, S. Colin, M. Picheral, F. M. Cornejo-Castillo, S. G. Acinas, R. Pepperkok, E. Karsenti, C. de Vargas, P. Wincker, C. Bowler, R. A. Foster
Abstract
Biological nitrogen fixation plays a critical role in marine primary production, yet, our understanding of marine N2-fixers (diazotrophs) is hindered by limited observations. Here, we developed a quantitative image analysis pipeline in concert with mapping of molecular markers for mining >2,000,000 images and >1,300 metagenomes in surface, deep chlorophyll maximum and mesopelagic samples across 6 size fractions (20 {micro}m). Imaging and molecular data estimated that polyploidy can significantly impact gene abundances of symbiotic vs colonial-forming diazotrophs. In general our results support the canonical view that larger sized diazotrophs (>10 m) dominate the tropical belts, while sequences from unicellular cyanobacterial and non-cyanobacterial diazotrophs were globally distributed in surface and the mesopelagic. Co-occurring diazotrophic lineages of different lifestyles were frequently encountered, and several new high density regions of diazotrophs were identified in the global ocean. Overall, this work provides an update of marine diazotroph biogeographical diversity and contributes a new bio-imaging-informatic workflow.
- assay: imaging
- assay: metagenomics
- research focus: cell type annotation
- research focus: spatial domain detection
- approach: deep learning
- approach: statistical model
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