bioRxivGeneticsPreprint
Meta-analysis of spatial genetic patterns among European saproxylic beetles - the influence of history and contemporary forest quality
Rama Sarvani KroviiD, Nermeen R. AmeriD, Maria OczkowicziD, Łukasz KajtochiD
Abstract
The phylogeography of forest-dwelling species in Europe is well understood, although our knowledge regarding the genetics of saproxylic beetles remains insufficient. This knowledge gap extends to understanding the influence of both quaternary history and contemporary forest dynamics on population genetics. To fill this gap, we conducted a systematic review and meta-analysis of recent literature concerning saproxylic beetle taxa with available genetic data. We include both threatened and common species in our study which enabled us to generalize our findings to the whole saproxylic community. Results suggest a latitudinal decrease in diversity in most species, likely influenced by Pleistocene glaciation and subsequent population expansions from southern refugia. Additionally, we observed an east-west gradient in diversity, with threatened species exhibiting higher diversity towards the east. This may reflect historical forest dynamics and anthropogenic pressures, such as heavy wood logging in Western Europe. Similarly, we found a pattern along altitude, with populations in higher elevation forests, which are often more natural, exhibiting higher diversity. Furthermore, we identified distinct phylogenetic units or genetic clusters in southern Europe reflecting the distribution of glacial refugia. For some taxa, distinct units were also reported in eastern Europe where populations spread from Asian refugia. Central Europe showed a high number of phylogenetic units, although unique (private) clades or clusters were absent. Most likely it is an effect of the presence of beetles that originated from various refugia belonging to different phylogenetic units. This study brings insights into general phylogeographic patterns, which have previously been examined only for single representatives of saproxylic beetles. It should also help in the proper planning of conservation and management efforts of wood-dwelling beetles.
- assay: DNA methylation
- assay: whole-genome sequencing
- research focus: phylogenetics / evolution
- research focus: gene regulatory network inference
- research focus: differential expression
- research focus: clustering
- approach: statistical model
- approach: benchmark study
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Geography and forest naturalness as drivers of genetic diversity in saproxylic beetles
Nermeen R. Amer, Rama Sarvani Krovi, … Łukasz Kajtoch·bioRxiv·Nov 29, 2025
- Sample coverage standardization ranks species richness of saproxylic beetles across European tree genera
Ronja Nußer, Anne Chao, … Simon Thorn·bioRxiv·Sep 29, 2026
- Beyond deadwood volume: structural heterogeneity and species-specific dispersal shape saproxylic beetle genetics
Rama Sarvani Krovi, Nermeen R. Amer, … Łukasz Kajtoch·bioRxiv·Jul 22, 2026
- Metric-dependent genomic diversity reveals phylogenetic and ecological structure in saproxylic beetles
Rama Sarvani Krovi, Nermeen R. Amer, … Łukasz Kajtoch·bioRxiv·Sep 4, 2026
- From forest decline to salvage logging: cascading impacts on saproxylic beetle diversity
Jérémy Cours, Aurélien Sallé, … Christophe Bouget·bioRxiv·Nov 28, 2025
- Latitudinal trends in genetic diversity and distinctiveness of Quercus robur rear edge forest remnants call for new conservation priorities
Camilla Avanzi, Francesca Bagnoli, … Andrea Piotti·Diversity and DistributionsPeer-reviewed·Apr 1, 2025