bioRxivMicrobiologyPreprint
Effects of Willow and Pine tree growth in bacterial abundance, interactions and metabolic profile in a copper mine tailing
Jaime OrtegaiD, Gabriel Gálvez, Gladis SerranoiD, Jorge TorresiD, Víctor Aliaga-TobariD, Emilio VilchesiD, Angélica Reyes, Vinicius Maracaja‐CoutinhoiD, Valentina ParraiD, Alex Di GenovaiD, Lorena PizarroiD, Mauricio LatorreiD
Abstract
The Cauquenes tailings is one of the largest mine tailings in Chile and represents a significant environmental hazard due to its high copper levels and acidic pH. However, there is evidence of willow and pine tree growth in these terrains, which is unexpected given the extreme conditions of this environment. Considering the importance of plants in restoration strategies, the objective of this study was to analyze the effect that willow and pine growth have on the heavy metal contents of their surrounding soil, and the abundance, interaction, metabolic profile and assembly of the bacterial community. In the Cauquenes tailing, we collected samples from willow and pine vegetated soils as well as the surrounding non-vegetated soils. We analyzed characteristics such as heavy metal concentrations and pH levels in all sampled soils, and in tree leaves and roots. Vegetated sites exhibited lower copper levels and a neutral pH, while both tree species accumulated heavy metals in their tissues. We also determined bacterial abundance in all soil samples, and co-occurrence networks were constructed to assess bacterial interactions. Both trees promoted a higher abundance of Proteobacteria and had networks with higher modularity compared to non-vegetated soils. Finally, we estimated the metabolic profile of the bacterial community using PICRUSt 2 analysis and determined carbon source utilization with BioLog Ecoplates. PICRUSt 2 predicted higher metabolic activity in vegetated soils, and BioLog Ecoplate analysis revealed the utilization of a greater number of carbon sources. The microbial communities from vegetated soils were assembled in a deterministic manner, while the community from non-vegetated soils were stochastically assembled. In conclusion, tree growth mitigated the extreme conditions of the tailing and promoted a more active and healthier bacterial community. HighlightsO_LIWillow and pine tree can grow and mitigate toxic metal conditions in the tailings C_LIO_LIBoth trees provoked a shift in bacterial abundance and interaction network C_LIO_LIThe provoked shift was tree-dependent C_LIO_LIMicrobial activity was higher in vegetated soils C_LI
- assay: metagenomics
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Legacy copper/nickel mine tailings potentially harbor novel iron/sulfur cycling microorganisms within highly variable communities
M. Chen, D. S. Gregoire, … L. A. Hug·bioRxiv·Jan 24, 2024
- Copper reduces the virulence of bacterial communities at environmentally relevant concentrations
L. Lear, D. Padfield, … M. Vos·bioRxiv·Jun 2, 2023
- Rhizosphere metagenomics of mine tailings colonizing plants: assembling and selecting synthetic bacterial communities to enhance in situ bioremediation
Miguel F. Romero, Diana Gallego, … Luis David Alcaraz·Microbiological ResearchPeer-reviewed·Mar 2, 2021
- Diverse microbial metal resistance and novel metal cycling organisms in copper/nickel mine tailings
Molly Chen, Daniel S. Grégoire, … Laura A. Hug·MetallomicsPeer-reviewed·Jan 1, 2026
- Profiling extremophile bacterial communities recovered from a mining tailing against soil ecosystems through comparative genome-resolved metagenomics and evolutionary analysis
Moises A. Rojas, Gladis Serrano, … Alex Di Genova·bioRxiv·Aug 28, 2024
- Microbial communities from weathered outcrops of a sulfide-rich ultramafic intrusion, and implications for mine waste management
K. K. Hobart, Z. Greensky, … D. S. Jones·bioRxiv·Oct 3, 2022