bioRxivEvolutionary Biology
Re-assessing the phylogenetic status and evolutionary relationship of Forest Owlet using genomic data
V. K L, M. Natesh, P. Mehta, R. Jayapal, S. Mukherjee, R. V.V
Abstract
Phylogenetic relationships are often challenging to resolve in recent/younger lineage when only a few loci are used. Ultra Conserved Elements (UCE) are highly conserved regions across taxa that help resolve shallow and deep divergences. We utilized UCEs harvested from whole genomes to assess the phylogenetic position and taxonomic affiliation of an endangered endemic owlet in the family Strigidae - the Forest Owlet Athene blewitti. The taxonomic placement of this species has been revised multiple times. A multigene study attempted to address the question but showed a discrepancy across datasets in its placement of the species within genus Athene. We assembled a dataset of 5018 nuclear UCE loci with increased taxon sampling. Forest Owlet was found to be an early split from the Athene clade but sister to other Athene; and consistent across three approaches - maximum likelihood, bayesian, and the multispecies coalescence. Divergence dating using fossil calibrations suggest that the Athene lineage split from its ancestor about 7.6Mya, and the Forest Owlet diverged about 5.2Mya, consistent with previous multigene approaches. Despite osteological differences from other Athene, we suggest the placement of the Forest Owlet as a member of the Athene to emphasize its evolutionary relationship. Graphical Abstract O_FIG_DISPLAY_L [Figure 1] M_FIG_DISPLAY C_FIG_DISPLAY HIGHLIGHTSO_LIPhylogenomics using genome-wide nuclear markers yielded a well-supported topology for Athene and Glaucidium lineages. C_LIO_LIThree different methods of phylogenetic tree construction showed that Forest Owlet is an early split from all other Athene species. C_LIO_LIDivergence dating in the bayesian framework puts the Forest Owlet age between 5.0my to 5.5my. C_LI
- assay: whole-genome sequencing
- research focus: phylogenetics / evolution
- approach: statistical model
- approach: Bayesian inference
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Whole-genome analyses resolve the phylogeny of flightless birds (Palaeognathae) in the presence of an empirical anomaly zone
A. Cloutier, T. B. Sackton, … S. V. Edwards·bioRxiv·Feb 9, 2018
- Categorical edge-based analyses of phylogenomic data reveal conflicting signals for difficult relationships in the avian tree
N. Wang, E. L. Braun, … S. A. Smith·bioRxiv·May 17, 2021
- Genomic characterization and curation of UCEs improves species tree reconstruction.
M. H. Van Dam, J. B. Henderson, … M. Trautwein·bioRxiv·Nov 1, 2019
- Phylogenomic Discordance in the Eared Seals is best explained by Incomplete Lineage Sorting following Explosive Radiation in the Southern Hemisphere
F. Lopes, L. R. Oliveira, … S. L. Bonatto·bioRxiv·Aug 11, 2020
- Neglected no longer: Phylogenomic resolution of higher-level relationships in Solifugae
S. Kulkarni, H. Steiner, … P. P. Sharma·bioRxiv·Oct 22, 2022
- Enigmas no longer: using Ultraconserved Elements to place several unusual hawk taxa and address the non-monophyly of the genus Accipiter (Accipitriformes: Accipitridae)
T. A. Catanach, M. R. Halley, S. Pirro·Biological Journal of the Linnean SocietyPeer-reviewed·Mar 22, 2024