NeuroImageNeurosciencePeer-reviewed journal article
Dynamics of Functional Network Organization Through Graph Mixture Learning
Ilaria RicchiiD, Anjali TaruniD, Hermina Petric MaretićiD, Pascal Frossard BiD, Dimitri Van De VilleiD
- Citations
- 14
- FWCI
- 1.55
- Field percentile
- top 19%
Abstract
Understanding the organizational principles of human brain activity at the systems level remains a major challenge in network neuroscience. Here, we introduce a fully data-driven approach based on graph learning to extract meaningful repeating network patterns from regionally-averaged time-courses. We use the Graph Laplacian Mixture Model (GLMM), a generative model that treats functional data as a collection of signals expressed on multiple underlying graphs. By exploiting covariance between activity of brain regions, these graphs can be learned without resorting to structural information. To validate the proposed technique, we first apply it to task fMRI with a known experimental paradigm. The probability of each graph to occur at each time-point is found to be consistent with the task timing, while the spatial patterns associated to each epoch of the task are in line with previously established activation patterns using classical regression analysis. We further on apply the technique to resting state data, which leads to extracted graphs that correspond to well-known brain functional activation patterns. The GLMM allows to learn graphs entirely from the functional activity that, in practice, turn out to reveal high degrees of similarity to the structural connectome. We compared similarity of the default mode network estimated from different task data and comparing them to each other and to structure. Using different metrics, a similar distinction between high- and low-level cognitive tasks arises. Overall, this method allows us to infer relevant functional brain networks without the need of structural connectome information. Moreover, we find that these networks correspond better to structure compared to traditional methods.
- organism: human
- assay: bulk RNA-seq
- research focus: gene regulatory network inference
- research focus: benchmarking
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Graph neural fields: a framework for spatiotemporal dynamical models on the human connectome
Marco Aqil, Selen Atasoy, … Rikkert Hindriks·PLoS Computational BiologyPeer-reviewed·Jan 28, 2021
- Joint subject-identification and task-decoding from inferred functional brain graphs via a multi-task neural network
Elif Sema Balcioglu, Berkay Döner, … Hamid Behjat·IEEE International Symposium on Biomedical Imaging (ISBI)Peer-reviewed·May 27, 2024
- Prediction of brain functions from structural connectome using graph neural network
- Structure Can Predict Function in the Human Brain: A Graph Neural Network Deep Learning Model of Functional Connectivity and Centrality Based on Structural Connectivity
Josh Neudorf, Shaylyn Kress, Ron Borowsky·Brain Structure and FunctionPeer-reviewed·Oct 11, 2021
- Emergence of Canonical Functional Networks from the Structural Connectome
Xihe Xie, Chang Cai, … Ashish Raj·NeuroImagePeer-reviewed·May 19, 2021
- Mixtures of large-scale dynamic functional brain network modes
Chetan Gohil, Evan Roberts, … Mark W. Woolrich·NeuroImagePeer-reviewed·Aug 27, 2022