Human Brain MappingNeurosciencePeer-reviewed journal article
(Un)common space in infant neuroimaging studies: a systematic review of infant templates
Alexander J. DuffordiD, C. Alice Hahn, Hannah Peterson, Silvia GiniiD, Saloni MehtaiD, Alexis Alfano, Dustin ScheinostiD
Abstract
In neuroimaging, spatial normalization is an important step that maps an individuals brain onto a template brain permitting downstream statistical analyses. Yet, in infant neuroimaging, there remain several technical challenges that have prevented the establishment of a standardized template for spatial normalization. Thus, many different approaches are used in the literature. To quantify the popularity and variability of these approaches in infant neuroimaging studies, we performed a systematic review of infant MRI studies from 2000 to 2020. Here, we present results from 833 studies meeting inclusion criteria. Studies were classified into 1) processing data in single subject space, 2) using a predefined, or "off the shelf", template, 3) creating a study specific template or 4) using a hybrid of these methods. We found that across the studies in the systematic review, single subject space was the most used (no common space). This was the most used common space for DWI and structural MRI studies while fMRI studies preferred off the shelf atlases. We found a pattern such that more recently published studies are more commonly using off the shelf atlases. When considering special populations, preterm studies most used single subject space while, when no special populations were being analyzed, an off the shelf template was most common. The most used off the shelf templates were the UNC Infant Atlases (26.1%). Using a systematic review of infant neuroimaging studies, we highlight a lack of an established "standard" template brain in these studies.
- assay: imaging
- research focus: benchmarking
- research focus: database / resource
- approach: statistical model
- approach: benchmark study
- Citations
- 14
- FWCI
- 0.21
- Field percentile
- 29th percentile
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- The FinnBrain Multimodal Neonatal Template and Atlas Collection: T1, T2, and DTI brain templates, and accompanying cortical and subcortical atlases
Jetro J. Tuulari, Aylin Rosberg, … John D. Lewis·bioRxiv·Jan 18, 2024
- Brain Templates for Chinese Babies from Newborn to Three Months of Age
Xiujuan Geng, Peggy Hiu Ying Chan, … Patrick C. M. Wong·NeuroImagePeer-reviewed·Feb 10, 2024
- A series of five population-specific Indian brain templates and atlases spanning ages 6 to 60 years
Bharath Holla, Paul A. Taylor, … Vivek Benegal·Human Brain MappingPeer-reviewed·Aug 26, 2020
- Differences in the spatial and temporal patterns of head motion during MRI of adults and infants
Rhodri Cusack, Annika Carola Linke, … Conor J. Wild·bioRxiv·Mar 6, 2017
- Feasibility of FreeSurfer processing for T1-weighted brain images of 5-year-olds: semiautomated protocol of FinnBrain Neuroimaging Lab
Elmo P. Pulli, Eero A. Silver, … Jetro J. Tuulari·Frontiers in NeurosciencePeer-reviewed·May 2, 2022
- How to read a baby's mind: Re-imagining fMRI for awake, behaving infants
Cameron Thomas Ellis, Lena J. Skalaban, … Nicholas B. Turk‐Browne·bioRxiv·Feb 11, 2020