bioRxivBioinformaticsPreprint
A deep learning model trained on only eight whole-slide images accurately segments tumors: wise data use versus big data
Tanguy PerenneciD, Raphaël BourgadeiD, Sébastien Henno, Christine SaganiD, Claire S. ToquetiD, Nathalie C. Rioux-LeclercqiD, Solène‐Florence Kammerer‐JacquetiD, Delphine LoussouarniD, Matthias GriebeliD
Abstract
Computer-assisted pathology is one of the biggest challenges in the medicine of the future. However, artificial intelligence is struggling to gain acceptance in the broader medical community due to data security issues, lack of trust in the machine, and poor data availability. Here, we develop a tumor delineation algorithm with only eight whole slide images of ovarian cancer to demonstrate the feasibility of an artificial intelligence application created from only a few data, finely annotated and with optimal processing. We test the model on seventeen other slides from the same hospital. The predictions are similar to the ground truth annotations made by an expert pathologist, with a mean DICE score of 0.90 [0.85 - 0.93]. The results on slides from another hospital are consistent, suggesting that the model is generalizable and that its performance does not suffer from different data acquisition. This study demonstrates the feasibility of a contouring algorithm based on a reduced dataset well optimized, going against the commonly accepted idea that a phenomenal amount of data is paramount. This study paves the way for other medical applications, especially for rare pathologies with limited available data.
- Citations
- 1
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A foundation model for generalizable cancer diagnosis and survival prediction from histopathological images
Zhaochang Yang, Ting Wei, … Zhangsheng Yu·Nature CommunicationsPeer-reviewed·Mar 10, 2025
- A pilot exploratory study of the potentials of deep learning methods in cancer image segmentation and classification
Eric Yi, Yanling Liu·bioRxiv·Nov 12, 2020
- Democratizing computational pathology: optimized Whole Slide Image representations for The Cancer Genome Atlas
Tristan Lazard, Marvin Lerousseau, … Thomas Walter·bioRxiv·Dec 4, 2023
- An efficient context-aware approach for whole slide image classification
- Swarm learning for decentralized artificial intelligence in cancer histopathology
Oliver Lester Saldanha, Philip Quirke, … Jakob Nikolas Kather·Nature MedicinePeer-reviewed·Apr 25, 2022
- Efficient pan-cancer whole-slide image classification and outlier detection using convolutional neural networks
S. Bilaloglu, J. Wu, … A. Tsirigos·bioRxiv·May 14, 2019