Plant Gene Expression Analysis

Global organization of phenylpropanoid and anthocyanin pathways revealed by proximity labeling of trans-cinnamic acid 4-hydroxylase (CYP73A412) in Petunia inflata petal protoplasts

This study uses proximity labeling to map protein interactions of the phenylpropanoid pathway in petunia, revealing co-localization of enzymes with CYP73A412.

Genome-wide analysis of flavonoid biosynthetic genes in Musaceae (Ensete, Musella, and Musa species) reveals amplification of flavonoid 3',5'-hydroxylase

The paper identifies and analyzes flavonoid biosynthetic genes in Musaceae species, revealing gene amplification and copy number variation linked to stress responses and pigmentation.

T and Z, Partial Seed Coat Patterning Genes in Common Bean, Provide Insight into the Structure and Protein Interactions of a Plant MBW Complex

The paper identifies and characterizes the Z, P, and T genes in common bean that form an MBW complex regulating flavonoid gene expression through protein interactions.

KIPEs3: Automatic annotation of biosynthesis pathways

KIPEs3 automatically annotates biosynthesis pathways, demonstrating its application to flavonoid and carotenoid pathways in multiple plant species.

Predictive links between petal color and pigment quantities in natural Penstemon hybrids

The paper establishes predictive relationships between petal color and pigment quantities in Penstemon hybrids using spectral reflectance and anthocyanin measurements.

Three R2R3-MYB transcription factors from banana (Musa spp.) activate structural anthocyanin biosynthesis genes as part of an MBW complex

Genome-wide analysis of the apple family 1 glycosyltransferases identified a flavonoid-modifying UGT, MdUGT83L3, which is targeted by MdMYB88 and contributes to stress adaptation

The paper identifies MdUGT83L3, a flavonoid-modifying UGT in apple, regulated by MdMYB88, which enhances stress tolerance through flavonoid metabolism.

An LTR retrotransposon in the promoter of a PsMYB10.2 gene associated with the regulation of fruit flesh color in Japanese plum

The paper identifies an LTR retrotransposon in the promoter of PsMYB10.2 gene that explains red flesh color in Japanese plum and develops a molecular marker for marker-assisted selection.

Comparative transcriptomic analysis reveals key components controlling spathe color in Anthurium andraeanum (Hort.)

The paper identifies differentially expressed genes and potential regulatory factors involved in spathe color variation in Anthurium andraeanum using transcriptomic analysis.

Functional characterisation of banana (Musa spp.) 2-oxoglutarate-dependent dioxygenases involved in flavonoid biosynthesis

This study identifies and functionally characterizes 2-oxoglutarate-dependent dioxygenase genes in banana involved in flavonoid biosynthesis, showing their ability to complement Arabidopsis mutants.

Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation

The paper identifies lncRNAs associated with anthocyanin biosynthesis in carrots and links a NAT to the regulation of DcMYB7.

MYB5a/NEGAN activates petal anthocyanin pigmentation and shapes the MBW regulatory network in Mimulus luteusvar. variegatus

The paper identifies MYB5a as a gene responsible for petal lobe anthocyanin pigmentation in Mimulus luteus var. variegatus and shows its regulatory impact on the MBW network.

Linking Anthocyanin Diversity, Hue, And Genetics In Purple Corn

The paper maps genetic loci associated with anthocyanin diversity and hue in purple corn using a landrace population, identifying QTL near known loci and candidate genes.

miRNA858b Inhibits Proanthocyanidin Accumulation by Repression of DkMYB19 and DkMYB20 in Persimmon

This study identifies miRNA858b as a regulator of proanthocyanidin accumulation in persimmon by repressing DkMYB19 and DkMYB20 transcription factors.

Comparative Genome Analysis of Scutellaria baicalensis and Scutellaria barbata Reveals the Evolution of Active Flavonoid Biosynthesis

This study compares the genomes of Scutellaria baicalensis and Scutellaria barbata to reveal evolutionary changes in flavonoid biosynthesis genes.

Genome-wide analysis of chalcone synthase (CHS) family from eggplant (Solanum melongena L.) in flavonoid biosynthetic pathway and expression pattern in response to heat stress

The paper identifies and analyzes CHS genes in eggplant, showing their expression patterns under heat stress and their role in anthocyanin biosynthesis.

Physiological and transcriptomic analysis of yellow leaf

The paper analyzes physiological and transcriptomic differences between yellow and green leaves of Populus deltoides to identify genes involved in chlorophyll regulation.

Characterization of the Rosa roxbunghii Tratt transcriptome and analysis of MYB genes

The paper characterizes the transcriptome of Rosa roxbunghii Tratt and identifies MYB genes expressed in mature fruit, validated by qRT-PCR.