Plant Gene Expression Analysis

Multi-omics analysis reveals the regulatory mechanism of flavonol biosynthesis during the formation of petal color in Camellia nitidissima

This study identifies the regulatory mechanism of flavonol biosynthesis during golden petal formation in Camellia nitidissima by integrating transcriptome, proteome, and metabolome data.

The investigation on metabolites, genes and open chromatins involved in colored leaves of Eucommia ulmoides 'Ziye'

The paper identifies flavonoids and molecular mechanisms in colored leaves of Eucommia ulmoides 'Ziye' using metabolomics, RNA-seq, and ATAC-seq.

Combined omics unravels the molecular mechanism of golden-leaf coloration in Koelreuteria paniculata 'jinye'

The paper identifies molecular mechanisms behind golden leaf coloration in a mutant plant by analyzing omics data and gene expression changes.

Genome-wide analysis of the apple family 1 glycosyltransferases identified a flavonoid-modifying UGT, MdUGT83L3, which is targeted by MdMYB88 and contributes to stress adaptation

The paper identifies MdUGT83L3, a flavonoid-modifying UGT in apple, regulated by MdMYB88, which enhances stress tolerance through flavonoid metabolism.

Sequence Analysis of WRKY Transcription Factor Family in Dendrobium officinale

The paper analyzes WRKY transcription factors in Dendrobium officinale by identifying 74 genes and characterizing their phylogeny, structure, and regulatory elements.

An LTR retrotransposon in the promoter of a PsMYB10.2 gene associated with the regulation of fruit flesh color in Japanese plum

The paper identifies an LTR retrotransposon in the promoter of PsMYB10.2 gene that explains red flesh color in Japanese plum and develops a molecular marker for marker-assisted selection.

Comparative transcriptomic analysis reveals key components controlling spathe color in Anthurium andraeanum (Hort.)

The paper identifies differentially expressed genes and potential regulatory factors involved in spathe color variation in Anthurium andraeanum using transcriptomic analysis.

Functional characterisation of banana (Musa spp.) 2-oxoglutarate-dependent dioxygenases involved in flavonoid biosynthesis

This study identifies and functionally characterizes 2-oxoglutarate-dependent dioxygenase genes in banana involved in flavonoid biosynthesis, showing their ability to complement Arabidopsis mutants.

Unraveling the regulatory role of miRNAs responsible for proanthocyanidin biosynthesis in the underutilized legume Psophocarpus tetragonolobus (L.) DC.

This study identifies miRNAs involved in proanthocyanidin biosynthesis in Psophocarpus tetragonolobus by comparing miRNA profiles between high and low proanthocyanidin lines.

Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation

The paper identifies lncRNAs associated with anthocyanin biosynthesis in carrots and links a NAT to the regulation of DcMYB7.

MYB5a/NEGAN activates petal anthocyanin pigmentation and shapes the MBW regulatory network in Mimulus luteusvar. variegatus

The paper identifies MYB5a as a gene responsible for petal lobe anthocyanin pigmentation in Mimulus luteus var. variegatus and shows its regulatory impact on the MBW network.

Linking Anthocyanin Diversity, Hue, And Genetics In Purple Corn

The paper maps genetic loci associated with anthocyanin diversity and hue in purple corn using a landrace population, identifying QTL near known loci and candidate genes.

miRNA858b Inhibits Proanthocyanidin Accumulation by Repression of DkMYB19 and DkMYB20 in Persimmon

This study identifies miRNA858b as a regulator of proanthocyanidin accumulation in persimmon by repressing DkMYB19 and DkMYB20 transcription factors.

Transcriptome analysis of an albino mutant in Haworthia cooperi var. pilifera

The paper identifies differentially expressed genes in an albino mutant of Haworthia cooperi var. pilifera and links them to chlorophyll biosynthesis and leaf pigmentation.

Transcriptome Analysis of the Eggplant Fruits Overexpressing a Gene of Chlorogenic Acid Pathway

This study overexpresses SmHQT in eggplant fruits, leading to increased chlorogenic acid content and upregulation of phenylpropanoid pathway genes.

Comparative Genome Analysis of Scutellaria baicalensis and Scutellaria barbata Reveals the Evolution of Active Flavonoid Biosynthesis

This study compares the genomes of Scutellaria baicalensis and Scutellaria barbata to reveal evolutionary changes in flavonoid biosynthesis genes.

GWAS AND GENOMIC SELECTION FOR INCREASED ANTHOCYANIN CONTENT IN PURPLE CORN

This study uses GWAS and genomic selection to identify genetic factors influencing anthocyanin content in purple corn and evaluates the effectiveness of genomic predictions for breeding programs.

Genome-wide analysis of chalcone synthase (CHS) family from eggplant (Solanum melongena L.) in flavonoid biosynthetic pathway and expression pattern in response to heat stress

The paper identifies and analyzes CHS genes in eggplant, showing their expression patterns under heat stress and their role in anthocyanin biosynthesis.

Physiological and transcriptomic analysis of yellow leaf

The paper analyzes physiological and transcriptomic differences between yellow and green leaves of Populus deltoides to identify genes involved in chlorophyll regulation.

Sequence Analysis and Homology Modelling of SmHQT Protein, a Key Player in Chlorogenic Acid Pathway of Eggplant

The paper analyzes the sequence of SmHQT protein in eggplant and performs homology modelling to understand its role in chlorogenic acid pathway.

Characterization of the Rosa roxbunghii Tratt transcriptome and analysis of MYB genes

The paper characterizes the transcriptome of Rosa roxbunghii Tratt and identifies MYB genes expressed in mature fruit, validated by qRT-PCR.

MdMYB3 helps regulate anthocyanin accumulation in apple calli under moderately acidic conditions

This study shows that MdMYB3 promotes anthocyanin accumulation in apple calli under moderately acidic conditions by up-regulating MdDFR and MdUFGT expression.

Pericarp Pigmentation Correlates with Hormones and Intensifies with Continuation of Bud Sport Generations from ‘Red Delicious’

The paper investigates how hormone levels and bud sport generations affect pericarp pigmentation in apple mutants by analyzing anthocyanin content and gene expression.

Duplications and functional specialization force distinct evolution of isoflavonoid biosynthetic genes in legumes

The paper investigates the evolutionary origin of legume-specific isoflavonoid biosynthesis through gene duplication and functional specialization in key biosynthetic genes.

Comparative Transcriptomic and Metabolomic Analyses in Response to Cold in Tartary Buckwheat (Fagopyrum tataricum)

The paper examines cold-induced changes in the transcriptome and metabolome of tartary buckwheat, focusing on the phenylpropanoid pathway, and identifies upregulated transcripts and metabolites.

A pseudogene of caffeic acid-o-methyltransferase (COMT) in Acacia mangium: Comparative analysis with other COMT plant promoters

The paper identifies a pseudogene of COMT in Acacia mangium, analyzes its promoter region, and discusses its potential regulatory functions and miRNA-related structures.