The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Hugo Dalla-Torre, Liam Gonzalez, Javier Mendoza‐Revilla, Nicolás López Carranza, Adam Grzywaczewski, Francesco Oteri, Christian Dallago, Evan Trop, Bernardo P. de Almeida, Hassan Sirelkhatim, Guillaume Richard, Marcin J. Skwark, Karim Beguir, M. Lopez, Thomas Pierrot
The paper introduces the Nucleotide Transformer, a foundation model for genomics, showing it can predict molecular phenotypes from DNA sequences with transfer learning across tasks and organisms.
Nature Methods · Nov 28, 2024Peer-reviewedGenomics