Benchmarking Database Systems for Genomic Selection Implementation
Yaw Nti-Addae, Dave Matthews, Victor Jun Ulat, Raza Syed, Guilhem Sempéré, Adrien Pétel, Jon Renner, Pierre Larmande, Valentin Guignon, Elizabeth Jones, Kelly R. Robbins
The paper benchmarks six open-source database systems for genomic selection, finding that HDF5 outperforms others in data extraction speed due to efficient allele matrix handling.
Database · Jan 1, 2019Peer-reviewedGenomics