NeighborFinder: an R package inferring local microbial network around a species of interest
Mathilde Sola, Adrien Paravel, Sandrine Auger, Jean‐Marc Chatel, Florian Plaza Oñate, Emmanuelle Le Chatelier, Marion Leclerc, Patrick Veiga, Clémence Frioux, Mahendra Mariadassou, Magali Berland
R package NeighborFinder infers a focal species' co-abundance neighbors via repeated cross-validated ℓ1 regression, reaching F1 ≥ 0.95 on simulated cohorts of 250 to 1000 samples.
Bioinformatics Advances · Jan 1, 2026Peer-reviewedSystems Biology✦ In-depth digest