Author

Ahmed Shuaibi

Princeton University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant effect prediction· 2 Research Focus:benchmarking· 1 Organism:human· 1 Research Focus:variant calling· 1 Assay:whole-exome sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Benjamin J. RaphaeliD· 1 shared Dmitri S. Pavlichin· 1 shared Hanlee P. JiiD· 1 shared HoJoon LeeiD· 1 shared John BelliD· 1 shared Uthsav ChitraiD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 7 mutual co-author links

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1 shared paperCancer Biology

Benjamin J. RaphaelORCID

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2 papers

Recent·Most cited

A latent variable model for evaluating mutual exclusivity and co-occurrence between driver mutations in cancer

Ahmed Shuaibi, Uthsav Chitra, Benjamin J. Raphael

DIALECT improves the identification of mutual exclusivity and co-occurrence between driver mutations by distinguishing them from passenger mutations in cancer genomics data.

bioRxiv · Apr 24, 2024 · PreprintCancer Biology

Unique K-mer sequences for validating cancer-related substitution, insertion and deletion mutations

HoJoon Lee, Ahmed Shuaibi, John Bell, Dmitri S. Pavlichin, Hanlee P. Ji

The paper develops a method using k-mer sequences to validate somatic mutations in cancer genome sequencing data, showing it effectively identifies true positive mutations including insertions and deletions.

NAR Cancer · Dec 1, 2020Peer-reviewedBioinformatics