Author

Ajinkya Deshpande

Carnegie Mellon University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Assay:spatial transcriptomics· 2 Research Focus:batch correction / integration· 1 Approach:deep learning· 1 Research Focus:spatial domain detection· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Jian MaiD· 2 shared Spencer KriegeriD· 2 shared Ellie Haber· 1 shared Zhilei BeiiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 5 mutual co-author links

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2 shared papersBioinformatics

Jian MaORCID

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2 papers

Recent·Most cited

Unified integration of spatial transcriptomics across platforms

Ellie Haber, Ajinkya Deshpande, Jian Ma, Spencer Krieger

LO_SCPLOWLOKIC_SCPLOW integrates spatial transcriptomics data across platforms without shared gene panels, improving cross-technology spatial gene program identification and tissue alignment.

Genome Research · Dec 1, 2025Peer-reviewedBioinformatics

MIMYR: Generative modeling of missing tissue in spatial transcriptomics

Ajinkya Deshpande, Zhilei Bei, Jian Ma, Spencer Krieger

MIMYR reconstructs missing tissue regions in spatial transcriptomics data using a generative framework that predicts cell locations, assigns cell types, and generates gene expression profiles.

bioRxiv · Nov 24, 2025 · PreprintBioinformatics