EcOH: In silico serotyping of E. coli from short read data
Danielle Ingle, Mary Valcanis, Alex Kuzevski, Marija Tauschek, Michael Inouye, Tim Stinear, Myron M Levine, Roy M Robins-Browne, Kathryn E. Holt
EcOH serotypes E. coli from short read data by directly screening against a curated database of alleles, validated on 197 isolates and applied to public outbreak data.
Microbial Genomics · Jul 11, 2016Peer-reviewedMicrobiology