A knowledge graph and topological data analysis framework to disentangle the tomato-multi pathogens complex gene regulatory network
maxime multari, Mathieu Carrière, Xavier Amoros-Gabarron, Alexina Damy, Sebastian Lobentanzer, Julio Sáez-Rodríguez, Stéphanie Jaubert‐Possamai, Aurélien J. F. Dugourd, Silvia Bottini
The paper constructs a knowledge graph and uses topological data analysis to uncover the gene regulatory network of tomato's response to multiple pathogens, identifying key transcription factors and regulatory hubs.
bioRxiv · Apr 9, 2025 · PreprintSystems Biology