Author

Alfred Nilsson

Science for Life Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Assay:metagenomics· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Joel LapiniD· 1 shared Lukas KälliD· 1 shared Mathias WilhelmiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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3 top collaborators · 3 mutual co-author links

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1 shared paperBioinformatics

Joel LapinORCID

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1 paper

Recent·Most cited

Pairwise Attention: Leveraging Mass Differences to Enhance De Novo Sequencing of Mass Spectra

Joel Lapin, Alfred Nilsson, Mathias Wilhelm, Lukas Käll

This paper introduces Pairwise Attention, a modified transformer encoder for de novo peptide sequencing from MS2 spectra, improving precision by 12.7% on a nine-species benchmark.

Journal of Proteome Research · Jun 2, 2025Peer-reviewedBioinformatics