Author

Amber Lin

Harvard University

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Systems Biology· 1

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Research Focus:software / tool· 1

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August C. Damiani· 1 shared Berk A. AlpayiD· 1 shared Walter FontanaiD· 1 shared

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2026-2026 · peak 1/yr

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1 shared paperSystems Biology

August C. Damiani

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1 paper

Recent·Most cited

PyKappa: Rule-based modeling in Python

Berk A. Alpay, Amber Lin, August C. Damiani, Walter Fontana

PyKappa is a Python package for rule-based modeling that enables interactive simulation and analysis, including with agentic AI, demonstrated through a phase separation case study.

bioRxiv · Sep 24, 2026 · PreprintSystems Biology