Author

Ameya Gokhale

Boston University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:graph neural network· 1 Organism:human· 1 Research Focus:perturbation response prediction· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Pawel F. PrzytyckiiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

1 paper

Recent·Most cited

Cis-TERN: a graph-based method to integrate single-cell chromatin accessibility with gene expression data to infer the pseudotime ordering of cells

Ameya Gokhale, Pawel F. Przytycki

Cis-TERN integrates scRNA-seq and scATAC-seq data to infer pseudotime ordering without prior biological knowledge, aligning with known lineages and tracing cancer cells to progenitors.

bioRxiv · Nov 21, 2025 · PreprintBioinformatics