Arfa Jabin

Direct pathway enrichment prediction from histopathological whole slide images and comparison with gene expression mediated models

This study compares direct pathway enrichment prediction from histopathological WSIs with gene expression-mediated models in TCGA-BRCA, finding direct prediction performs better.

A comprehensive benchmark of publicly available image foundation models for their usability to predict gene expression from whole slide images

The paper benchmarks five image foundation models for predicting gene expression from whole-slide images using the TCGA-BRCA cohort, finding domain-aligned models outperform general-purpose ones.