A comparative study of SVDquartets and other coalescent-based species tree estimation methods
Jed Chou, Ashu Gupta, Shashank Yaduvanshi, Ruth Davidson, Mike Nute, Siavash Mirarab, Tandy Warnow
This paper compares SVDquartets with ASTRAL-2, NJst, and concatenation for species tree estimation under varying ILS, finding ASTRAL-2 most accurate under high ILS, concatenation under low ILS, and SVDquartets competitive with short gene sequences.
BMC Genomics · Oct 2, 2015Peer-reviewedGenomics