Author

Barret Perchuk

Howard Hughes Medical Institute

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Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Casey S. GreeneiD· 1 shared Courtney E. PriceiD· 1 shared Deborah A. HoganiD· 1 shared Georgia DoingiD· 1 shared Jie TaniD· 1 shared Kathleen CheniD· 1 shared Kimberley A. LewisiD· 1 shared Kyle C. CadyiD· 1 shared

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2017-2017 · peak 1/yr

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9 top collaborators · 36 mutual co-author links

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1 shared paperSystems Biology

Casey S. GreeneORCID

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1 paper

Recent·Most cited

Unsupervised extraction of stable expression signatures from public compendia with eADAGE

Jie Tan, Georgia Doing, Kimberley A. Lewis, Courtney E. Price, Kathleen Chen, Kyle C. Cady, Barret Perchuk, Michael T. Laub, Deborah A. Hogan, Casey S. Greene

The paper introduces eADAGE, an ensemble method to extract stable expression signatures from public data, revealing a phosphate starvation response in Pseudomonas aeruginosa controlled by PhoB and requiring KinB.

Cell Systems · Jul 1, 2017Peer-reviewedSystems Biology