Author

Benoit Guibert

Inserm

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Organism:human· 3 Research Focus:differential expression· 2 Approach:machine learning (classical)· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Anthony Boureux· 3 shared Florence RuffléiD· 3 shared Thérèse CommesiD· 3 shared Chloé BessièreiD· 2 shared Daniel GautheretiD· 2 shared Haoliang XueiD· 2 shared Anne-Laure Bougé· 1 shared Camille MarchetiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersBioinformatics

Anthony Boureux

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Author profile →

3 papers

Recent·Most cited

Exploring a large cancer cell line RNA-sequencing dataset with k-mers

Chloé Bessière, Haoliang Xue, Benoit Guibert, Anthony Boureux, Florence Rufflé, Julien Viot, Rayan Chikhi, Mikaël Salson, Camille Marchet, Thérèse Commes, Daniel Gautheret

The paper introduces a k-mer-based method to quantify RNA sequences from large RNA-seq datasets, demonstrating its accuracy for variant RNA detection in cancer cell lines.

bioRxiv · Feb 27, 2024 · PreprintBioinformatics

A k-mer based transcriptomics analysis for NPM1-mutated AML

Raíssa Silva, Cédric Riedel, Benoit Guibert, Florence Rufflé, Anthony Boureux, Thérèse Commes

The paper develops a k-mer based transcriptomics analysis to distinguish NPM1-mutated from non-mutated AML patients, achieving over 95% accuracy in three scenarios.

medRxiv · Jan 31, 2023 · PreprintGenetic & Genomic Medicine

Kmerator Suite: design of specific k-mer signatures andautomatic metadata discovery in large RNA-Seq datasets.

Sébastien Riquier, Chloé Bessière, Benoit Guibert, Anne-Laure Bougé, Anthony Boureux, Florence Rufflé, Jérôme Audoux, Nicolas Gilbert, Haoliang Xue, Daniel Gautheret, Thérèse Commes

The paper introduces Kmerator Suite, a set of tools for extracting k-mer signatures and inferring metadata from RNA-seq datasets, showing high accuracy in gene expression quantification and metadata discovery.

NAR Genomics and Bioinformatics · Jun 23, 2021Peer-reviewedBioinformatics