RabbitCD-HIT: Distributed High-Sensitivity Greedy Incremental Clustering for Billion-Scale Protein Sequences in Hours
Yijie Gao, Guiliang Ma, Zekun Yin, Lifeng Yan, Yang Yang, Tong Zhang, Tiancheng Zhao, Zhuo Liu, Xiaohui Duan, Beifang Niu, Bertil Schmibt, Weiguo Liu
RabbitCD-HIT clusters billion-scale protein sequences efficiently, achieving faster performance than CD-HIT on large datasets.
bioRxiv · Nov 9, 2026 · PreprintBioinformatics