Author

C Titus Brown

University of California, Davis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Organism:human· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Bryan Briney· 1 shared C Robin Buell· 1 shared Christina Chan· 1 shared Dennis R Burton· 1 shared James A Stapleton· 1 shared Janet SH Lorv· 1 shared Jeongwoon Kim· 1 shared John P Hamilton· 1 shared

Activity by Year

2015-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Bryan Briney

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2 papers

Recent·Most cited

genomeRxiv: a genome-based identification web server that bridges the gap between taxonomy and strain typing

Reza Mazloom, Rituraj Sharma, Janet SH Lorv, Sehgeet Kaur, Parul Sharma, C Titus Brown, N. Tessa Pierce-Ward, Leighton Pritchard, Lenwood S. Heath

The paper introduces genomeRxiv, a web server that enables precise strain-level identification of prokaryotes using ANI-based LINs, overcoming limitations of traditional taxonomic classification.

bioRxiv · Oct 13, 2026 · PreprintBioinformatics

Haplotype-phased synthetic long reads from short-read sequencing

James A Stapleton, Jeongwoon Kim, John P Hamilton, Ming Wu, Luiz C Irber, Rohan Maddamsetti, Bryan Briney, Linsey Newton, Dennis R Burton, C Titus Brown, Christina Chan, C Robin Buell, Timothy A Whitehead

This paper introduces a method to generate long synthetic reads from short reads, achieving high accuracy across various genomic samples and applications.

bioRxiv · Jul 21, 2015Genomics