Author

Caleb M. Dillingham

University of Wisconsin–Madison

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Alireza Fotuhi SiahpiraniiD· 1 shared Rupa SridharaniD· 1 shared Saptarshi PyneiD· 1 shared Sunnie Grace McCallaiD· 1 shared Sushmita RoyiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Alireza Fotuhi SiahpiraniORCID

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1 paper

Recent·Most cited

Uncovering Functional Gene Regulatory Networks in Bulk and Single-Cell Data through Robust Transcription Factor Activity Estimation and Model-Guided Experimental Validation

Alireza Fotuhi Siahpirani, Sunnie Grace McCalla, Saptarshi Pyne, Caleb M. Dillingham, Rupa Sridharan, Sushmita Roy

The paper introduces MERLIN+P+TFA to robustly estimate transcription factor activity and infer gene regulatory networks from bulk and single-cell data, showing improved accuracy in yeast and mammalian systems.

bioRxiv · Jun 9, 2025 · PreprintBioinformatics