Author

Carlton Yan

University of British Columbia

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Approach:large language model· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Organism:human· 1 Organism:rat· 1

Frequent Co-Authors

Burak Ogan MancarciiD· 2 shared Paul PavlidisiD· 2 shared Amanda Maximo· 1 shared Anna Xiao· 1 shared Brianna Xu· 1 shared Rachel Schwartz· 1 shared Sanja RogićiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Burak Ogan MancarciORCID

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2 papers

Recent·Most cited

Detailed curation of biological samples and experimental designs for genomics using LLM-supported agentic workflows

Paul Pavlidis, Burak Ogan Mancarci, Amanda Maximo, Carlton Yan, Rachel Schwartz

The paper describes a software tool using LLMs to automate data curation for genomics, achieving performance near human curators with lower cost and higher speed.

bioRxiv · Aug 2, 2026 · PreprintBioinformatics

Application of large language models to the annotation of cell lines and mouse strains in genomics data

Sanja Rogić, Burak Ogan Mancarci, Brianna Xu, Anna Xiao, Carlton Yan, Paul Pavlidis

This paper evaluates using GPT-4o to annotate mouse strains and cell lines in genomics data, achieving 77% and 59% accuracy, and identifies manual curation errors.

Database · Jan 1, 2026Peer-reviewedBioinformatics