Author

Cedric Chauve

Simon Fraser University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Annie Chateau· 1 shared Eric Tannier· 1 shared Jens StoyeiD· 1 shared Joao Paulo Peirera Zanetti· 1 shared Kamil Hepak· 1 shared Leonard BohnenkämperiD· 1 shared Luca ParmigianiiD· 1 shared Severine Berard· 1 shared

Activity by Year

2015-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperBioinformatics

Annie Chateau

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3 papers

Recent·Most cited

On Deriving Synteny Blocks by Compacting Elements

Leonard Bohnenkämper, Luca Parmigiani, Kamil Hepak, Cedric Chauve, Jens Stoye

This paper introduces a formal framework for deriving synteny blocks directly from sequence data to better capture genomic rearrangements without obscuring structural variation.

Journal of Computational Biology · Oct 19, 2026Peer-reviewedBioinformatics

Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach

Cedric Chauve, Yann Ponty, Joao Paulo Peirera Zanetti

The paper extends the DeCo algorithm to sample evolutionary scenarios under a Boltzmann distribution and applies it to mammalian gene trees, reducing syntenic conflicts in ancestral adjacencies.

bioRxiv · Sep 8, 2015Bioinformatics

Ancestral gene synteny reconstruction improves extant species scaffolding

Yoann Anselmetti, Vincent Berry, Cedric Chauve, Annie Chateau, Eric Tannier, Severine Berard

This paper introduces a method to improve genome scaffolding by reconstructing ancestral gene synteny, showing it enhances scaffolding accuracy across multiple eukaryotic species.

bioRxiv · Jul 23, 2015Bioinformatics