Influenza Classification from Short Reads with VAPOR Facilitates Robust Mapping Pipelines and Zoonotic Strain Detection for Routine Surveillance Applications
Joel Southgate, Matthew J. Bull, Clare M. Brown, Joanne Watkins, Sally A. Corden, Benjamin Southgate, Catherine Moore, Thomas R. Connor
The paper introduces VAPOR, a de Bruijn Graph-based classifier for influenza WGS datasets, improving read mapping and zoonotic strain detection from short reads.
Bioinformatics · Oct 30, 2019Peer-reviewedBioinformatics