Author

D. E. B. Gomes

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 3

Signature Assays, Organisms & Methods

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Research Focus:protein folding & dynamics· 3 Approach:statistical model· 3 Approach:deep learning· 2 Assay:proteomics· 2 Organism:bacteria (other)· 1 Assay:CUT&Tag· 1 Organism:human· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

R. C. Bernardi· 3 shared B. Yang· 1 shared M. A. Nash· 1 shared M. C. R. Melo· 1 shared M. Forrester· 1 shared M. Pace· 1 shared P. S. F. C. Gomes· 1 shared P. S. Gomes· 1 shared

Activity by Year

2022-2024 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 15 mutual co-author links

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3 shared papersBiophysics

R. C. Bernardi

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Integrating Dynamic Network Analysis with AI for Enhanced Epitope Prediction in PD-L1:Affibody Interactions

D. E. B. Gomes, B. Yang, R. Vanella, M. A. Nash, R. C. Bernardi

The paper develops an integrated method combining dynamic network analysis with AI to predict epitopes in PD-L1:Affibody interactions, showing the perpendicular binding mode is more stable.

bioRxiv · Feb 8, 2024Biophysics

May the force be with you: the role of hyper-mechanostability of the bone sialoprotein binding protein during early stages of Staphylococci infections

P. S. Gomes, M. Forrester, M. Pace, D. E. B. Gomes, R. C. Bernardi

The paper investigates the mechanostability of the Bbp:Fg complex using SMFS and SMD simulations, finding Bbp to be highly mechanostable with rupture forces exceeding 2 nN.

bioRxiv · Dec 9, 2022Biophysics

Bridging the gap between in vitro and in silico single-molecule force spectroscopy

D. E. B. Gomes, M. C. R. Melo, P. S. F. C. Gomes, R. C. Bernardi

The paper bridges the gap between in vitro and in silico single-molecule force spectroscopy by combining coarse-grained and all-atom SMD simulations with DHS theory.

bioRxiv · Jul 14, 2022 · PreprintBiophysics