REPrise: de novo interspersed repeat detection using inexact seeding
Atsushi Takeda, Daisuke Nonaka, Yuta Imazu, Tsukasa Fukunaga, Michiaki Hamada
REPrise improves de novo interspersed repeat detection by incorporating inexact seeding and other techniques, outperforming RepeatScout in sensitivity for mutated repeats.
bioRxiv · Jan 21, 2024 · PreprintBioinformatics