Frequency Chaos Game Representation - Singular Value Decomposition for Alignment-Free Phylogenetic Analysis
Varsha Achuthan, Deeptangi Mangsuli, Neelam Sinha, Shweta Ramdas
This paper introduces SVD-FCGR, an alignment-free phylogenetic analysis method using SVD on FCGR, showing improved resolution and scalability over MEGA for viral datasets.
bioRxiv · Apr 16, 2025 · PreprintBioinformatics