Author

Dezhong Deng

Oregon State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Research Focus:variant calling· 1

Frequent Co-Authors

David A. HendrixiD· 2 shared Liang HuangiD· 2 shared David H. MathewsiD· 1 shared Kai ZhaoiD· 1 shared Mason N. RouchesiD· 1 shared Michelle W. WileyiD· 1 shared Padideh Danaee· 1 shared

Activity by Year

2018-2018 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

David A. HendrixORCID

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2 papers

Recent·Most cited

bpRNA: Large-scale Automated Annotation and Analysis of RNA Secondary Structure

Padideh Danaee, Mason N. Rouches, Michelle W. Wiley, Dezhong Deng, Liang Huang, David A. Hendrix

The paper introduces bpRNA, a tool for annotating RNA secondary structures, and presents a large database of annotated structures for improving structure prediction and analysis.

Nucleic Acids Research · Apr 11, 2018Peer-reviewedBioinformatics

LinearFold: Linear-Time Prediction of RNA Secondary Structures

Dezhong Deng, Kai Zhao, David A. Hendrix, David H. Mathews, Liang Huang

LinearFold predicts RNA secondary structures in linear time using dynamic programming with beam search pruning, achieving higher accuracy on long sequences and long-range base pairs.

bioRxiv · Feb 14, 2018 · PreprintBioinformatics