Author

Dongge Ma

Second Affiliated Hospital of Zhejiang University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Assay:protein structure· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:mechanistic / dynamical model· 1 Research Focus:protein design· 1 Research Focus:protein folding & dynamics· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Jiahua Peng· 2 shared Jingjing Zhao· 2 shared Kaining LiuiD· 2 shared Qiuting Qian· 2 shared Yifei Yao· 2 shared David C. HayiD· 1 shared Jiarui Wang· 1 shared Jinliang LiuiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBiophysics

Jiahua Peng

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2 papers

Recent·Most cited

Molecular dynamics descriptors for 1,079 post-translationally modified protein systems

Kaining Liu, Qiuting Qian, Jiahua Peng, Dongge Ma, Yifei Yao, Jingjing Zhao, Ying Chi

The paper provides a resource of 1,079 post-translationally modified protein systems with molecular dynamics simulations and descriptors for research and method evaluation.

bioRxiv · Aug 24, 2026 · PreprintBiophysics

ProteinFlux: accurate, rapid and scalable generative prediction of protein dynamics driven by post-translational modifications

Qiuting Qian, Jiahua Peng, Dongge Ma, Kaining Liu, Yihan Cheng, Yanqi Deng, Jingjing Zhao, Shen Su, Yifei Yao, Yuan Qu, Rao Fu, Jinliang Liu, Make Zhao, Yu Xiao, Keying Wang, , Y G

ProteinFlux predicts protein conformational dynamics influenced by post-translational modifications using a generative framework, outperforming traditional methods in speed and accuracy.

bioRxiv · May 11, 2026 · PreprintBioinformatics