Exploring chemotaxis in spatio-temporal stoichiometric models of metabolism: Pseudomonas simiae as a case study
Hui Shi, Ercole LiPuma, Haroon Qureshi, Phineas McMillan, Jing Zhang, Melisa L. Osborne, Ilija Dukovski, Daniel Segrè
The paper develops a chemotaxis module for COMETS, a microbial ecosystem simulation tool, and applies it to Pseudomonas simiae to study chemotaxis and metabolism coupling.
bioRxiv · Aug 5, 2025 · PreprintSystems Biology