De novo identification, differential analysis and functional annotation of SNPs from RNA-seq data in non-model species
Helene Lopez Maestre, Lilia Brinza, Camille Marchet, Janice Kielbassa, Sylvere Bastien, Mathilde Boutigny, David Monnin, Adil El Filali, Claudia Marcia Carareto, Cristina Vieira, Franck Picard, Natacha Kremer, Fabrice Vavre, Marie-France Sagot, Vincent Lacroix
The paper introduces a reference-free method to identify, quantify, and annotate SNPs from RNA-seq data in non-model species, showing comparable accuracy to reference-based methods.
Nucleic Acids Research · Jul 25, 2016Peer-reviewedBioinformatics